Program

The program is available here.

Accepted papers for a long presentation

• Magali Michaut, Anastasia Baryshnikova, Michael Costanzo, Chad L. Myers, Brenda Andrews, Charlie Boone and Gary D. Bader. Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes
• Caroline Bérard, Sandra Derozier, Sandrine Balzergue, Tristan Mary-Huard, François Roudier, Stéphane Robin, Alain Lecharny, Vincent Colot, Michel Caboche, Sébastien Aubourg and Marie-Laure Martin-Magniette. Design and exploitation of a versatile Arabidopsis whole-Genome Tiling Array
• Cécile Guichard, Franck Samson, Sandra Derozier, Jean Philippe Tamby, Veronique Brunaud, Vincent Thareau, Christophe Caron, Maria Tchoumakov, Roberto Bacilieri, Anne Francoise Adam Blondon and Sébastien Aubourg. Structural and functional genomics in grapevine through FLAGdb++
• Vincent Miele, Simon Penel and Laurent Duret. Ultra-fast sequence clustering from similarity networks with SiLiX
• Delphine Potier, Stein Aerts, Carl Herrmann and Laurent Perrin. Bioinformatic predictions and experimental validation of cis-regulatory modules in development: Application to cardiogenesis in D.melanogaster
• Leslie Regad, Juliette Martin and Anne-Claude Camproux. Structural-alphabet motifs in protein loop structures: from structure to function
• Camille Charbonnier, Julien Chiquet and Christophe Ambroise. Weighted-Lasso for Structured Network Inference from Time Course Data
• Chun-Long Chen, Benjamin Audit, Lauranne Duquenne, Guillaume Guilbaud, Aurélien Rappailles, Yves d'Aubenton-Carafa, Olivier Hyrien, Alain Arneodo and Claude Thermes. Replication-associated mutational strand asymmetry in the human genome
• Aurélie Bergon, Cyrille Lepoivre, Fabrice Lopez, Denis Thieffry, Jean Imbert, Christine Brun, Carl Herrmann and Denis Puthier. Mining microarray data for regulatory interactions with TranscriptomeBrowser
• Philippe Bordron, Damien Eveillard and Irena Rusu. Integrating omics data by using a gene neighboring based distance
• Rabie Saidi, Mondher Maddouri and Engelbert Mephu Nguifo. A feature extraction method based on substitution matrices for classifying protein sequences
• Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Hans Geiselmann and Hidde de Jong. The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
• Vincent Noel, Sergei Vakulenko and Ovidiu Radulescu. Piecewise smooth hybrid systems as models for networks in molecular biology
• Mathieu Clément-Ziza and Andreas Beyer. Genetic dissection of post-transcriptional regulation of gene expression
• Ovidiu Radulescu, Alexander N. Gorban and Andrei Zinovyev. Parametric robustness in gene networks: reliable functioning with unreliable components
• Jean-Philippe Doyon, Celine Scornavacca, Gergely J. Szöllősi, Vincent Ranwez and Vincent Berry. An efficient algorithm for gene/species trees parsimonious reconciliation with losses, duplications, and transfers

Accepted papers for a short presentation

• David Parsons, Carole Knibbe and Guillaume Beslon. Influence of the rearrangement rates on the organization of genome transcription
• Henning Hermjakob, Sandra Orchard, Bruno Aranda, Margaret Duesbury, Marine Dumousseau, Samuel Kerrien and Jyoti Khadake. The IntAct molecular interaction database and data distribution with PSICQUIC
• Andrey Kajava. Analyse Structurale de Protéines avec des Répétitions en Tandem par des Approches Hybrides
• Thomas Lacroix, Valentin Loux, Annie Gendrault, Jean Francois Gibrat and Hélène Chiapello. Evaluating Genome Browsers Using a Software Qualification Method
• Jeremy Bellay, Sangjo Han, Magali Michaut, Gary D. Bader, Chad L. Myers and Philip M. Kim. Functional and structural disorder: comparative genomics and genetic interactions distinguish functional roles of disorder
• Matthieu Chavent, Antoine Vanel, Alex Teck, Bruno Levy, Bruno Raffin and Marc Baaden. A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors
• Abdel Aouacheria, Valentine Rech de Laval, Gilbert Deléage and Christophe Combet. Characterization of the Bcl-2 family using structure-aided HMM framework
• Cyprien Guérin, Hélène Chiapello and Pierre Nicolas. Origine des Spécificités Phénotypiques de la Levure Œnologique a travers une Approche Génomique
• Matthieu Barba, Olivier Lespinet and Bernard Labedan. Fast and accurate multiple sequence alignment of large and diversified sets of distant homologues
• Amine Ghozlane, Frédéric Bringaud, Fabien Jourdan and Patricia Thébault. MetaBoFlux: a method to analyse flux distribution in metabolic networks
• Adam Smith, Marcel Salanoubat, Jean Weissenbach, Claudine Medigue and David Vallenet. Bioinformatics exploration of the enzymatic diversity of an uncharacterised protein family
• Marie Touchon and Eduardo Rocha. The small, slow and specialized CRISPR and Anti-CRISPR of EscherichiaSalmonella
• Amaury Vaysse, Abhirami Ratnakumar, Thomas Derrien, Kerstin Lindblad-Toh, Catherine André, Matthew T. Webster and Christophe Hitte. Differentiation of allelic frequencies analysis identifies short genomic regions with signatures of artificial selection between canine breeds
• Jacques Dainat, Pierre Pontarotti, Philippe Gouret, Julie Thompson and Olivier Poch. GeneLoss: Automation of the study of lineage-specific gene loss and pseudogenisation
• Véronique Giudicelli and Marie-Paule Lefranc. IMGT-ONTOLOGY for immunogenetics and immunoinformatics information systems
• Christelle Dantec and Emmanuel Courcelle. Plume: Promoting Economical, Useful and Maintained Software for the Higher Education and the Research Community
• Christelle Reynes, Leslie Regad, Robert Sabatier and Anne-Claude Camproux. Prediction of patterns of interest from protein primary sequence through structural alphabet
• Clément Rezvoy, Daniel Kahn and Frédéric Vivien. Scalability of large-scale protein domain inference
• Christophe Caron, Célia Michotey, Ludovic Legrand, Hélène Chiapello, Valentin Loux, Annie Gendrault and Jean-François Gibrat. Web Services for MIcrobial Genome Annotation using Data Integration
• Duncan Bérenguier, Claudine Chaouiya, Elisabeth Rémy and Denis Thieffry. Computational analysis of the dynamics of logical regulatory graphs
• Cedric Saule, Mireille Regnier, Jean-Marc Steyaert and Alain Denise. Enumération de structures ARN avec pseudonoeuds
• David Goudenège, Stéphane Avner, Céline Lucchetti-Miganeh and Frédérique Barloy-Hubler. CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources
• François Ehrenmann and Marie-Paule Lefranc. IMGT/3Dstructure-DB and tools for immunoglobulins (IG) or antibodies, T cell receptors (TR), MHC, IgSF and MhcSF structural data
• Gregory Nuel, Leslie Regad, Juliette Martin and Anne-Claude Camproux. Exact distribution of a pattern in a set of random sequences
• Nicolas Pons, Jean-Michel Batto, Sean Kennedy, Mathieu Almeida, Fouad Boumezbeur, Bouziane Moumen, Emmanuelle Le Chatelier, S. Dusko Ehrlich and Pierre Renault. METEOR - a plateform for quantitative metagenomic profiling of complex ecosystems
• Stefan Wolfsheimer, Alexander K Hartmann and Gregory Nuel. ppALIGN: posterior probabilities for score-based alignments